In surface mining, the ground covering the coal seam (the overburden) is first removed to expose the coal seam for extraction. The elements of a surface mining operation are (1) topsoil removal and storage for later use, (2) drilling and blasting the strata overlying the coal seam, (3) loading and transporting this fragmented overburden material (called spoil), (4) drilling and blasting the ...

Background: Cyst nematodes are devastating plant parasites that become sedentary within plant roots and induce the transformation of normal plant cells into elaborate feeding cells with the help of secreted effectors, the parasitism proteins. These proteins are the translation products of parasitism genes and are secreted molecular tools that allow cyst nematodes to infect plants.

Allele mining requires various sophisticated bio-informatic tools which are useful for sequence alignment in order to compare the new sequence to reference genome ie, sequenced genome.

Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol. 2002; 48 :501–10. [ PubMed ] [ Google Scholar ]

The U.S. coal industry serves a vital role in the nation's economy by producing fuel for more than half of its electricity. Despite the industry's importance, industry financial data for 2005—the strongest year for the coal industry in recent years—shows that it is a relatively small industry with revenues totaling $20 billion to $25 billion and net income between $1 billion and $2 ...

Large quantities of sequence data are being generated by the latest second generation sequencing technologies and these provide a valuable resource for the mining of molecular markers (Imelfort et al., 2009). While the large volume of next generation sequencing data are generally produced at the expense of sequence quality, the over sampling of ...

Developed simple sequence repeat (SSR) markers using Illumina, and 454 sequencing technologies in plants. Cont. Schematic overview of the de novo transcriptome assembly process.

Plant Pathology and Microbiology Publications Plant Pathology and Microbiology 2009 Sequence mining and transcript profiling to explore cyst nematode parasitism Axel A. Elling Iowa State University Makedonka Mitreva Washington University School of Medicine in St. Louis Xiaowu Gai The Children's Hospital of Philadelphia John Martin

Mining industries provide many of the raw materials for equipment we use daily, from aluminum cans up to electronic chips of cell phones and computers. To arrive here, metal mining steadily increased over the centuries, with occasional "rushes" for several minerals (silver, gold, radium, etc.) which occurred in connection with booms in ...

Hundreds of bacterial genomes including the genomes of dozens of plant pathogenic bacteria have been sequenced. These genomes represent an invaluable resource for molecular plant pathologists. In this review, we describe different approaches that can be used for mining …

We cast the problem of mining for causes of plan failures as the problem of finding sequential patterns (Agrawal 95). An itemset is an unordered collection of items, all of which are assumed to occur at the same time. A sequence is an ordered list of itemsets. A sequence, where each sequence element is denoted as (1 7! 7! n) j is an itemset ...

These genomes represent an invaluable resource for molecular plant pathologis... Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence - VINATZER - 2008 - Molecular Plant Pathology - Wiley Online Library

Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.

Coal Sequence Radiant COAL SEQUENCE Place the steps in the correct order to show the sequence of events that takes place for us to enjoy a world with electricity always at the ready! Energy from the Sun Plants and Animals Live and Die Millions of Years Go By Coal is Formed Geologists Locate Coal Coal Mining Coal is Transported to the Power Plant

MIDDAS-M (a m otif- i ndependent d e novo d etection a lgorithm for SM B gene clusters) is a gene cluster mining tool that uses genome and transcriptome data to identify gene clusters in fungal genomes. Reference: Umemura, M., et al., 2013, PLoS One 8:e84028. Link:

Plant material. A total of 26 accessions of P. kurroa were obtained from Himalayan Forest Research Institute (HFRI) field research station, Jagatsukh, Himachal Pradesh and coded as PKS-1 to PKS-26. These accessions were collected from different locations in Himachal Pradesh and planted in same environmental conditions in small fields at Jagatsukh (altitude 1900 m).

Sequencing-based allele mining would help to analyze individuals for haplotype structure and diversity to infer genetic association studies in plants. Unlike EcoTilling, sequencing-based allele mining does not require much sophisticated equipment or involve tedious steps, but involves huge costs of sequencing.

Plant Genetic Resources Volume 1 Managing Sequencing And Mining Genetic Resources Yeah, reviewing a book genomics of plant genetic resources volume 1 managing sequencing and mining genetic resources could build up your close connections listings. This is just one of the solutions for you to be successful. As understood, skill does not suggest ...

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data Methods Mol Biol . 2017;1533:1-31. doi: 10.1007/978-1-4939-6658-5_1.

mining begins, a mining plan and a mine closure and restoration plan must be prepared and approved. These plans define the sequence and nature of extraction operations and detail the methods to be used in closure and restoration. These plans should be updated regularly (every three to five years) as mining progresses. Development Plan

Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants. Molecules. 23, 399 (2018). Google Scholar

Plant genomics projects involving model species and many agriculturally important crops are resulting in a rapidly increasing database of genomic and expressed DNA sequences. The publicly available collection of expressed sequence tags (ESTs) from several grass species can be used in the analysis of both structural and functional relationships in these genomes. We analyzed over 260 000 EST ...

Sequencing of many crop plant genomes is already completed, which was a major milestone for plant research (Huq et al. 2016). Reference genome sequence is …

The frequent use of genomic resources for plant breeding has led to the creation of a new term, genomics-assisted breeding (GAB), integrating all genomics tools and resources. In addition, we are facing a new breeding paradigm, genome selection (GS), by …

Simple Sequence Repeats (SSRs) are widely used in population genetic studies but their classical development is costly and time-consuming. The ever-increasing available DNA datasets generated by high-throughput techniques offer an inexpensive alternative for SSRs discovery. Expressed Sequence Tags (ESTs) have been widely used as SSR source for plants of economic relevance but …

Your startnumber can also be a 2 or 3 digit sequence using a field delimiter such as ., ;,,, : or a mix of these. For example: 1.1.1 or 1.1:1. Automatically the last digit will increment. To increment the first digit, use: autonumber inc A. To increment the second digit, use: autonumber inc B.

The first way in which proposed mining projects differ is the proposed method of moving or excavating the overburden. What follows are brief descriptions of the most common methods. 1.1.3.1 Open-pit mining Open-pit mining is a type of strip mining in which …

PLANT START-UP AND SHUT-DOWN SEQUENCE ENGSOFT Lab 2.0 Plant Start-up SEQUENCE 2.1 Plant Start-up Preparation Sequence 2.1.1 Energizing of Electrical and I&C System Energizing of plant electrical, instrumentation and control system shall be performed by receiving start-up …

Genomics of Plant Genetic Resources Volume 1. Managing, sequencing and mining genetic resources. Editors: Tuberosa, Roberto, Graner, Andreas, Frison, Emile (Eds ...

Sequence mining and transcript profiling to explore differentially expressed genes associated with lipid biosynthesis during soybean seed development. Huan Chen 1,2, Fa-Wei Wang 1, Yuan-Yuan Dong 1, Nan Wang 1, Ye-Peng Sun 1, Xiao-Yan Li 1, Liang Liu 2, Xiu-Duo Fan 2, Hai-Long Yin 1, Yuan-Yuan Jing 1, Xin-Yue Zhang 1, Yu-Lin Li 1, Guang Chen 2 ...

Mining • GSP (Generalized Sequential Pattern) mining algorithm • Outline of the method – Initially, every item in DB is a candidate of length-1 – for each level (i.e., sequences of length-k) do • scan database to collect support count for each candidate sequence • generate candidate length-(k+1) sequences from length-k